Transcript: lnc-BRD1-23:10

Basic information

LNCipedia transcript ID: lnc-BRD1-23:10 
LNCipedia gene ID: lnc-BRD1-23
Ensembl Gene ID: ENSG00000188511
Ensembl Transcript ID: ENST00000498829
Location (hg38): chr22:49415776-49425437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 741 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT087396; ENST00000498829.1
Alternative gene names: ENSG00000188511.12; C22orf34


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7118 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRD1-23:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf34-3:6
4.0 lnc-C22orf34-3:6
4.1 lnc-C22orf34-3:6
5.0 lnc-C22orf34-3:6
5.1 lnc-BRD1-13:10
5.2 lnc-BRD1-23:10