Transcript: lnc-BRD1-22:3

Basic information

LNCipedia transcript ID: lnc-BRD1-22:3 
LNCipedia gene ID: lnc-BRD1-22
Location (hg38): chr22:49662475-49664296
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1439 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029931; NONHSAT087413
Alternative gene names: XLOC_014411; linc-CERK-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.3878 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRD1-22:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C22orf34-1:3
3.1 lnc-C22orf34-1:3
4.0 lnc-C22orf34-1:3
4.1 lnc-C22orf34-1:3
5.0 lnc-C22orf34-1:3
5.1 lnc-BRD1-10:3
5.2 lnc-BRD1-22:3