Transcript: lnc-BPNT1-2:5

Basic information

LNCipedia transcript ID: lnc-BPNT1-2:5 
LNCipedia gene ID: lnc-BPNT1-2
Location (hg38): chr1:220266706-220267917
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1212 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT009595
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.0241 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BPNT1-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BPNT1-2:5
4.0 lnc-BPNT1-2:5
4.1 lnc-BPNT1-2:5
5.0 lnc-BPNT1-2:5
5.1 lnc-LEFTY2-80:5
5.2 lnc-BPNT1-2:5