Transcript: lnc-BOD1-4:1

Basic information

LNCipedia transcript ID: lnc-BOD1-4:1 
LNCipedia gene ID: lnc-BOD1-4
Ensembl Gene ID: ENSG00000253447
Ensembl Transcript ID: ENST00000517582
Location (hg38): chr5:174081506-174086559
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517582.1; RP11-619L12.4-001; OTTHUMT00000373482.1; NONHSAT105230; ENST00000517582.5
Alternative gene names: ENSG00000253447.1; RP11-619L12.4; OTTHUMG00000163447.1; ENSG00000253447.5; AC113423.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.8778 non-coding 
CPAT coding probability 10.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BOD1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BOD1-4:1
4.0 lnc-BOD1-4:1
4.1 lnc-BOD1-4:1
5.0 lnc-BOD1-4:1
5.1 lnc-PDLIM7-59:4
5.2 lnc-BOD1-4:1