Transcript: lnc-BOC-3:1

Basic information

LNCipedia transcript ID: lnc-BOC-3:1 
LNCipedia gene ID: lnc-BOC-3
Ensembl Gene ID: ENSG00000240057
Ensembl Transcript ID: ENST00000491578
Location (hg38): chr3:113157708-113162020
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005570; ENST00000491578.1; RP11-572M11.4-001; OTTHUMT00000354630.2; NONHSAT091220
Alternative gene names: XLOC_002760; linc-BOC; ENSG00000240057.1; RP11-572M11.4; OTTHUMG00000159327.4; ENSG00000240057.5; AC078785.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.9575 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BOC-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BOC-1:1
3.1 lnc-GTPBP8-1:5
4.0 lnc-GTPBP8-1:5
4.1 lnc-GTPBP8-1:5
5.0 lnc-GTPBP8-1:5
5.1 lnc-TIMMDC1-82:13
5.2 lnc-BOC-3:1