Transcript: lnc-BNIP1-3:6

Basic information

LNCipedia transcript ID: lnc-BNIP1-3:6 
LNCipedia gene ID: lnc-BNIP1-3
Ensembl Gene ID: ENSG00000253141
Ensembl Transcript ID: ENST00000518605
Location (hg38): chr5:173469682-173484584
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518605; ENST00000518605.1; CTB-164N12.1-001; OTTHUMT00000372716.1; NONHSAT105187
Alternative gene names: ENSG00000253141; CTB-164N12.1; ENSG00000253141.1; OTTHUMG00000163325.1; AC008632.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -442.0787 non-coding 
CPAT coding probability 6.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BNIP1-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BNIP1-3:6
3.1 lnc-BNIP1-3:6
4.0 lnc-BNIP1-3:6
4.1 lnc-BNIP1-3:6
5.0 lnc-BNIP1-3:6
5.1 lnc-ATP6V0E1-19:8
5.2 lnc-BNIP1-3:6