Transcript: lnc-BMT2-1:6

Basic information

LNCipedia transcript ID: lnc-BMT2-1:6 
LNCipedia gene ID: lnc-BMT2-1
Ensembl Gene ID: ENSG00000234520
Ensembl Transcript ID: ENST00000451962
Location (hg38): chr7:112954646-112995634
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 687 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451962; ENST00000451962.1; AC018464.3-001; OTTHUMT00000338936.1; NONHSAT122807; ENST00000451962.5
Alternative gene names: ENSG00000234520; AC018464.3; ENSG00000234520.1; OTTHUMG00000155236.1; ENSG00000234520.5; HRAT17; AC018464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.6825 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMT2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf60-1:1
3.1 lnc-C7orf60-1:1
4.0 lnc-C7orf60-1:1
4.1 lnc-C7orf60-1:1
5.0 lnc-C7orf60-1:1
5.1 lnc-TFEC-35:6
5.2 lnc-BMT2-1:6