Transcript: lnc-BGN-3:1

Basic information

LNCipedia transcript ID: lnc-BGN-3:1 
LNCipedia gene ID: lnc-BGN-3
Location (hg38): chrX:153485856-153487088
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 700 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000428676.1
Alternative gene names: ENSG00000224963.2; U82695.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 236.5241 coding 
CPAT coding probability 98.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BGN-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-U82695.9.1-3:1
4.1 lnc-U82695.9.1-3:1
5.0 lnc-U82695.9.1-3:1
5.1 lnc-MAGEA11-45:1
5.2 lnc-BGN-3:1