Transcript: lnc-BCL2L11-2:1

Basic information

LNCipedia transcript ID: lnc-BCL2L11-2:1 
LNCipedia gene ID: lnc-BCL2L11-2
Ensembl Gene ID: ENSG00000229118
Ensembl Transcript ID: ENST00000438897
Location (hg38): chr2:111265283-111279880
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 617 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002976; ENST00000438897; ENST00000438897.1; AC068491.2-001; OTTHUMT00000332141.1; NONHSAT073631
Alternative gene names: XLOC_001624; linc-MERTK-3; ENSG00000229118; AC068491.2; ENSG00000229118.1; OTTHUMG00000153690.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.0052 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL2L11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCL2L11-2:1
3.1 lnc-BCL2L11-2:1
4.0 lnc-BCL2L11-2:1
4.1 lnc-BCL2L11-2:1
5.0 lnc-BCL2L11-2:1
5.1 lnc-SULT1C4-35:1
5.2 lnc-BCL2L11-2:1