Transcript: lnc-BCKDHB-3:1

Basic information

LNCipedia transcript ID: lnc-BCKDHB-3:1 
LNCipedia gene ID: lnc-BCKDHB-3
Ensembl Gene ID: ENSG00000272129
Ensembl Transcript ID: ENST00000606629
Location (hg38): chr6:80355424-80356859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1436 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606629.1
Alternative gene names: ENSG00000272129.1; RP11-250B2.6; AL359715.4; AL359715.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.2535 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDHB-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCKDHB-3:1
4.0 lnc-BCKDHB-3:1
4.1 lnc-BCKDHB-3:1
5.0 lnc-BCKDHB-3:1
5.1 lnc-CYB5R4-29:1
5.2 lnc-BCKDHB-3:1