Transcript: lnc-BCKDHB-1:8

Basic information

LNCipedia transcript ID: lnc-BCKDHB-1:8 
LNCipedia gene ID: lnc-BCKDHB-1
Location (hg38): chr6:80443456-80463207
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 758 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011333; ENST00000443221; ENST00000443221.1; RP11-250B2.3-003; OTTHUMT00000041323.1; NONHSAT113732
Alternative gene names: XLOC_005365; linc-TPBG-3; ENSG00000233967; RP11-250B2.3; ENSG00000233967.1; OTTHUMG00000015092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.7562 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDHB-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCKDHB-1:7
3.1 lnc-BCKDHB-1:8
4.0 lnc-BCKDHB-1:8
4.1 lnc-BCKDHB-1:8
5.0 lnc-BCKDHB-1:8
5.1 lnc-CYB5R4-28:9
5.2 lnc-BCKDHB-1:8