Transcript: lnc-BCKDHB-1:4

Basic information

LNCipedia transcript ID: lnc-BCKDHB-1:4 
LNCipedia gene ID: lnc-BCKDHB-1
Ensembl Gene ID: ENSG00000233967
Ensembl Transcript ID: ENST00000452402
Location (hg38): chr6:80443344-80465927
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011332; ENST00000452402; ENST00000452402.1; RP11-250B2.3-001; OTTHUMT00000041321.1; NONHSAT113728; ENST00000452402.5
Alternative gene names: XLOC_005365; linc-TPBG-3; ENSG00000233967; RP11-250B2.3; ENSG00000233967.1; OTTHUMG00000015092.1; ENSG00000233967.2; ENSG00000233967.6; AL359715.2; AL359715.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.9315 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDHB-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCKDHB-1:4
3.1 lnc-BCKDHB-1:4
4.0 lnc-BCKDHB-1:4
4.1 lnc-BCKDHB-1:4
5.0 lnc-BCKDHB-1:4
5.1 lnc-CYB5R4-28:5
5.2 lnc-BCKDHB-1:4