Transcript: lnc-BCKDHB-1:11

Basic information

LNCipedia transcript ID: lnc-BCKDHB-1:11 
LNCipedia gene ID: lnc-BCKDHB-1
Ensembl Gene ID: ENSG00000233967
Ensembl Transcript ID: ENST00000427048
Location (hg38): chr6:80443390-80463053
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427048.2; ENST00000427048.6
Alternative gene names: ENSG00000233967.2; RP11-250B2.3; ENSG00000233967.6; AL359715.2; AL359715.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.7562 non-coding 
CPAT coding probability 19.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDHB-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCKDHB-1:11
4.0 lnc-BCKDHB-1:11
4.1 lnc-BCKDHB-1:11
5.0 lnc-BCKDHB-1:11
5.1 lnc-CYB5R4-28:7
5.2 lnc-BCKDHB-1:11