Transcript: lnc-BASP1-22:1

Basic information

LNCipedia transcript ID: lnc-BASP1-22:1 
LNCipedia gene ID: lnc-BASP1-22
Location (hg38): chr5:19289536-19320203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1497 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT100693; FPKM1_group_25062_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6071 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BASP1-22:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BASP1-22:1
4.0 lnc-BASP1-22:1
4.1 lnc-BASP1-22:1
5.0 lnc-BASP1-22:1
5.1 lnc-CARD6-179:1
5.2 lnc-BASP1-22:1