Transcript: lnc-BASP1-20:1

Basic information

LNCipedia transcript ID: lnc-BASP1-20:1 
LNCipedia gene ID: lnc-BASP1-20
Location (hg38): chr5:19233366-19234487
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1122 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT100691
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5989 non-coding 
CPAT coding probability 25.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BASP1-20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BASP1-20:1
4.0 lnc-BASP1-20:1
4.1 lnc-BASP1-20:1
5.0 lnc-BASP1-20:1
5.1 lnc-CARD6-181:1
5.2 lnc-BASP1-20:1