Transcript: lnc-BACE1-2:3

Basic information

LNCipedia transcript ID: lnc-BACE1-2:3 
LNCipedia gene ID: lnc-BACE1-2
Location (hg38): chr11:117206774-117209365
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 589 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT024392
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1478.6194 coding 
CPAT coding probability 72.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BACE1-2:3 no no no no

Available literature

  1. Liu (2014), Attenuated ability of BACE1 to cleave the amyloid precursor protein via silencing long noncoding RNA BACE1‑AS expression., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BACE1-2:3
4.0 lnc-BACE1-2:3
4.1 lnc-BACE1-2:3
5.0 lnc-BACE1-2:3
5.1 lnc-SCN4B-32:3
5.2 lnc-BACE1-2:3