Transcript: lnc-B3GNT10-21:19

Basic information

LNCipedia transcript ID: lnc-B3GNT10-21:19 
LNCipedia gene ID: lnc-B3GNT10-21
Location (hg38): chr9:120844874-120854373
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3519 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000447891; ENST00000447891.1; RP11-27I1.2-001; OTTHUMT00000053820.1; NONHSAT134527
Alternative gene names: ENSG00000226752; RP11-27I1.2; ENSG00000226752.1; OTTHUMG00000020572.1; ENSG00000226752.3; PSMD5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.2116 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-21:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTRL-1:3
3.1 lnc-CNTRL-1:3
4.0 PSMD5-AS1:13
4.1 PSMD5-AS1:13
5.0 PSMD5-AS1:13
5.1 lnc-B3GNT10-1:19
5.2 lnc-B3GNT10-21:19