Transcript: lnc-B3GALT5-1:4

Basic information

LNCipedia transcript ID: lnc-B3GALT5-1:4 
LNCipedia gene ID: lnc-B3GALT5-1
Ensembl Gene ID: ENSG00000225330
Ensembl Transcript ID: ENST00000416555
Location (hg38): chr21:39630271-39726085
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 544 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416555.1; AF064860.5-001; OTTHUMT00000194998.1; NONHSAT082204
Alternative gene names: ENSG00000225330.1; AF064860.5; OTTHUMG00000086721.1; AF064860.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0702 non-coding 
CPAT coding probability 7.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GALT5-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B3GALT5-1:1
4.0 lnc-B3GALT5-1:1
4.1 lnc-IGSF5-1:5
5.0 lnc-IGSF5-1:5
5.1 lnc-SIM2-77:1
5.2 lnc-B3GALT5-1:4