Transcript: lnc-AVPR2-3:2

Basic information

LNCipedia transcript ID: lnc-AVPR2-3:2 
LNCipedia gene ID: lnc-AVPR2-3
Location (hg38): chrX:153880672-153888971
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1372 bp
Exons: 8
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000614970.1
Alternative gene names: ENSG00000273769.4; LCA10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.7209 non-coding 
CPAT coding probability 71.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AVPR2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-U52112.12.1-3:1
4.1 lnc-U52112.12.1-3:1
5.0 lnc-U52112.12.1-3:1
5.1 lnc-MAGEA11-62:2
5.2 lnc-AVPR2-3:2