Transcript: lnc-AVPR2-3:1

Basic information

LNCipedia transcript ID: lnc-AVPR2-3:1 
LNCipedia gene ID: lnc-AVPR2-3
Ensembl Gene ID: ENSG00000273769
Ensembl Transcript ID: ENST00000618311
RefSeq ID: NR_130768
Location (hg38): chrX:153880672-153888990
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1392 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000618311.4; NR_130768.1
Alternative gene names: ENSG00000273769.4; LCA10; ENSG00000273769.5; U52112.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 7.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AVPR2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MAGEA11-62:1
5.1 lnc-MAGEA11-62:1
5.2 lnc-AVPR2-3:1