Transcript: lnc-ATXN7-17:5

Basic information

LNCipedia transcript ID: lnc-ATXN7-17:5 
HGNC Gene Symbol: lnc-ATXN7-17    
HGNC Full Gene Name: PSMD6 antisense RNA 2
Ensembl Gene ID: ENSG00000239653
Ensembl Transcript ID: ENST00000472046
Location (hg38): chr3:64004022-64012148
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2456 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000472046.1; RP11-245J9.2-001; OTTHUMT00000352081.1
Alternative gene names: ENSG00000239653.1; RP11-245J9.2; OTTHUMG00000158764.1; PSMD6-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7163 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN7-17:5 yes no no no

Available literature

  1. Wang (2017), Long non-coding RNA ENST00462717 suppresses the proliferation, survival, and migration by inhibiting MDM2/MAPK pathway in glioma., Biochem. Biophys. Res. Commun.
  2. Qiu (2016), Circulating Long Non-Coding RNAs Act as Biomarkers for Predicting 131I Uptake and Mortality in Papillary Thyroid Cancer Patients with Lung Metastases., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN7-2:1
4.0 PSMD6-AS2:1
4.1 PSMD6-AS2:1
5.0 PSMD6-AS2:1
5.1 lnc-ATXN7-17:1
5.2 lnc-ATXN7-17:5