Transcript: lnc-ATXN1-8:2

Basic information

LNCipedia transcript ID: lnc-ATXN1-8:2 
LNCipedia gene ID: lnc-ATXN1-8
Ensembl Gene ID: ENSG00000282024
Ensembl Transcript ID: ENST00000632346
Location (hg38): chr6:16259101-16262926
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1026 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000632346.1
Alternative gene names: ENSG00000282024.1; RP3-467D16.3; AL009031.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.4389 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN1-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ATXN1-8:2
4.1 lnc-ATXN1-8:2
5.0 lnc-ATXN1-8:2
5.1 lnc-C6orf62-113:2
5.2 lnc-ATXN1-8:2