Transcript: lnc-ATP8A1-1:6

Basic information

LNCipedia transcript ID: lnc-ATP8A1-1:6 
LNCipedia gene ID: lnc-ATP8A1-1
Location (hg38): chr4:42276835-42292642
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6291 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250781.1|MICT00000264024.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 36.2341 non-coding 
CPAT coding probability 14.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP8A1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP8A1-1:6
5.0 lnc-ATP8A1-1:6
5.1 lnc-GABRA4-19:4
5.2 lnc-ATP8A1-1:6