Transcript: lnc-ATP8A1-1:1

Basic information

LNCipedia transcript ID: lnc-ATP8A1-1:1 
LNCipedia gene ID: lnc-ATP8A1-1
Ensembl Gene ID: ENSG00000250781
Ensembl Transcript ID: ENST00000508911
RefSeq ID: NR_134668
Location (hg38): chr4:42299012-42391268
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007754; ENST00000508911.1; RP11-63A11.1-003; OTTHUMT00000363528.1; NONHSAT096194; NR_134668.1
Alternative gene names: XLOC_003939; linc-BEND4; ENSG00000250781.1; RP11-63A11.1; OTTHUMG00000161041.1; AC024022.1; LOC105374428


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.5068 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP8A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP8A1-1:1
3.1 lnc-ATP8A1-1:1
4.0 lnc-ATP8A1-1:1
4.1 lnc-ATP8A1-1:1
5.0 lnc-ATP8A1-1:1
5.1 lnc-GABRA4-19:1
5.2 lnc-ATP8A1-1:1