Transcript: lnc-ATP6V1G3-4:9

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:9 
HGNC Gene Symbol: lnc-ATP6V1G3-4    
HGNC Full Gene Name: MIR181A1 host gene
Ensembl Gene ID: ENSG00000229989
Ensembl Transcript ID: ENST00000432296
Location (hg38): chr1:198807658-198937410
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 930 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432296; ENST00000432296.1; RP11-31E23.1-001; OTTHUMT00000087434.1; NONHSAT008656
Alternative gene names: ENSG00000229989; RP11-31E23.1; ENSG00000229989.2; OTTHUMG00000035888.1; ENSG00000229989.3; MIR181A1HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8127 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:9 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1G3-2:3
3.1 lnc-ATP6V1G3-3:3
4.0 lnc-ATP6V1G3-4:9
4.1 lnc-ATP6V1G3-4:9
5.0 lnc-ATP6V1G3-4:9
5.1 lnc-MYOG-69:15
5.2 lnc-ATP6V1G3-4:9