Transcript: lnc-ATP6V1G3-4:8

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:8 
LNCipedia gene ID: lnc-ATP6V1G3-4
Location (hg38): chr1:198900018-198937429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 756 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000436880; ENST00000436880.1; RP11-31E23.1-003; OTTHUMT00000087436.1
Alternative gene names: ENSG00000229989; RP11-31E23.1; ENSG00000229989.2; OTTHUMG00000035888.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8127 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:8 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1G3-2:2
3.1 lnc-ATP6V1G3-3:1
4.0 lnc-ATP6V1G3-4:8
4.1 lnc-ATP6V1G3-4:8
5.0 lnc-ATP6V1G3-4:8
5.1 lnc-MYOG-69:6
5.2 lnc-ATP6V1G3-4:8