Transcript: lnc-ATP6V1G3-4:5

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:5 
LNCipedia gene ID: lnc-ATP6V1G3-4
RefSeq ID: NR_040073
Location (hg38): chr1:198808003-198937429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040073; NR_040073.1
Alternative gene names: MIR181A1HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8127 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:5 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6V1G3-4:5
4.0 lnc-ATP6V1G3-4:5
4.1 lnc-ATP6V1G3-4:5
5.0 lnc-ATP6V1G3-4:5
5.1 lnc-MYOG-69:8
5.2 lnc-ATP6V1G3-4:5