Transcript: lnc-ATP6V1G3-4:2

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:2 
LNCipedia gene ID: lnc-ATP6V1G3-4
Location (hg38): chr1:199006041-199021037
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1784 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00000112
Alternative gene names: XLOC_001149; linc-ATP6V1G3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.5624 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:2 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1G3-3:1
3.1 lnc-ATP6V1G3-4:2
4.0 lnc-ATP6V1G3-4:2
4.1 lnc-ATP6V1G3-4:2
5.0 lnc-ATP6V1G3-4:2
5.1 lnc-MYOG-69:1
5.2 lnc-ATP6V1G3-4:2