Transcript: lnc-ATP6V1G3-4:11

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:11 
HGNC Gene Symbol: lnc-ATP6V1G3-4    
HGNC Full Gene Name: MIR181A1 host gene
Ensembl Gene ID: ENSG00000229989
Ensembl Transcript ID: ENST00000412162
Location (hg38): chr1:198807493-198827216
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 942 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000712; ENST00000412162; ENST00000412162.1; RP11-31E23.1-002; OTTHUMT00000087435.1; NONHSAT008655
Alternative gene names: XLOC_001147; linc-ATP6V1G3-1; ENSG00000229989; RP11-31E23.1; ENSG00000229989.2; OTTHUMG00000035888.1; ENSG00000229989.3; MIR181A1HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.4815 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:11 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1G3-2:4
3.1 lnc-ATP6V1G3-3:4
4.0 lnc-ATP6V1G3-4:11
4.1 lnc-ATP6V1G3-4:11
5.0 lnc-ATP6V1G3-4:11
5.1 lnc-MYOG-69:17
5.2 lnc-ATP6V1G3-4:11