Transcript: lnc-ATP6V1G3-1:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-1:1 
LNCipedia gene ID: lnc-ATP6V1G3-1
Ensembl Gene ID: ENSG00000223881
Ensembl Transcript ID: ENST00000429469
Location (hg38): chr1:198597724-198598868
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000711; ENST00000429469; ENST00000429469.1; RP11-553K8.2-001; OTTHUMT00000086543.1; NONHSAT008642
Alternative gene names: XLOC_001146; linc-ATP6V1G3-4; ENSG00000223881; RP11-553K8.2; ENSG00000223881.1; OTTHUMG00000035655.1; AL157402.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1G3-1:1
3.1 lnc-ATP6V1G3-1:1
4.0 lnc-ATP6V1G3-1:1
4.1 lnc-ATP6V1G3-1:1
5.0 lnc-ATP6V1G3-1:1
5.1 lnc-MYOG-74:1
5.2 lnc-ATP6V1G3-1:1