Transcript: lnc-ATP5ME-1:23

Basic information

LNCipedia transcript ID: lnc-ATP5ME-1:23 
LNCipedia gene ID: lnc-ATP5ME-1
Ensembl Gene ID: ENSG00000242686
Ensembl Transcript ID: ENST00000599030
Location (hg38): chr4:652955-653789
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 637 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT094584; ENST00000599030.1
Alternative gene names: ENSG00000242686.2; RP11-1191J2.2; ENSG00000242686.4; AC107464.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.9112 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP5ME-1:23 no no no no

Available literature

  1. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5I-1:6
4.0 lnc-ATP5I-1:6
4.1 lnc-ATP5I-1:6
5.0 lnc-ATP5I-1:6
5.1 lnc-PSAPL1-115:23
5.2 lnc-ATP5ME-1:23