Transcript: lnc-ATP5IF1-1:2

Basic information

LNCipedia transcript ID: lnc-ATP5IF1-1:2 
LNCipedia gene ID: lnc-ATP5IF1-1
Ensembl Gene ID: ENSG00000271398
Ensembl Transcript ID: ENST00000605846
Location (hg38): chr1:28247144-28247568
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT001948; ENST00000605846.1
Alternative gene names: ENSG00000271398.1; RP5-1092A3.5; AL353622.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1227.4735 non-coding 
CPAT coding probability 14.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP5IF1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATPIF1-1:1
4.0 lnc-ATPIF1-1:1
4.1 lnc-ATPIF1-1:1
5.0 lnc-ATPIF1-1:1
5.1 lnc-ATP5IF1-1:1
5.2 lnc-ATP5IF1-1:2