Transcript: lnc-ATP2B2-1:3

Basic information

LNCipedia transcript ID: lnc-ATP2B2-1:3 
LNCipedia gene ID: lnc-ATP2B2-1
Location (hg38): chr3:10699922-10739208
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3975 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_2311_chr3:10741606-10780893_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.9637 non-coding 
CPAT coding probability 13.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP2B2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP2B2-1:3
4.0 lnc-ATP2B2-1:3
4.1 lnc-ATP2B2-1:3
5.0 lnc-ATP2B2-1:3
5.1 lnc-SEC13-1:3
5.2 lnc-ATP2B2-1:3