Transcript: lnc-ATP1B1-1:1

Basic information

LNCipedia transcript ID: lnc-ATP1B1-1:1 
LNCipedia gene ID: lnc-ATP1B1-1
Ensembl Gene ID: ENSG00000237707
Ensembl Transcript ID: ENST00000415637
RefSeq ID: NR_135799
Location (hg38): chr1:169104124-169104907
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000330; ENST00000415637.1; RP5-1018K9.1-001; OTTHUMT00000083698.1; NONHSAT007455; NR_135799.1
Alternative gene names: XLOC_000457; linc-ATP1B1-1; ENSG00000237707.1; RP5-1018K9.1; OTTHUMG00000034591.1; AL031726.1; LOC101928596


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -311.2654 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP1B1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP1B1-1:1
3.1 lnc-ATP1B1-1:1
4.0 lnc-ATP1B1-1:1
4.1 lnc-ATP1B1-1:1
5.0 lnc-ATP1B1-1:1
5.1 lnc-MAEL-46:2
5.2 lnc-ATP1B1-1:1