Transcript: lnc-ATP10D-23:2

Basic information

LNCipedia transcript ID: lnc-ATP10D-23:2 
LNCipedia gene ID: lnc-ATP10D-23
RefSeq ID: NR_125879
Location (hg38): chr4:47914227-47990737
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1666 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT096275; NR_125879; NR_125879.1
Alternative gene names: LOC101927157


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.9769 non-coding 
CPAT coding probability 8.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP10D-23:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NIPAL1-1:4
4.0 lnc-NIPAL1-1:4
4.1 lnc-NIPAL1-1:4
5.0 lnc-NIPAL1-1:4
5.1 lnc-ATP10D-6:4
5.2 lnc-ATP10D-23:2