Transcript: lnc-ATP10A-4:1

Basic information

LNCipedia transcript ID: lnc-ATP10A-4:1 
LNCipedia gene ID: lnc-ATP10A-4
Ensembl Gene ID: ENSG00000235518
Ensembl Transcript ID: ENST00000451816
Location (hg38): chr15:26657030-26658763
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 595 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451816; ENST00000451816.2; AC011196.3-001; OTTHUMT00000126737.2; NONHSAT041191
Alternative gene names: ENSG00000235518; AC011196.3; ENSG00000235518.2; OTTHUMG00000056662.2; AC011196.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.7411 non-coding 
CPAT coding probability 23.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP10A-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP10A-2:1
3.1 lnc-ATP10A-4:1
4.0 lnc-ATP10A-4:1
4.1 lnc-ATP10A-4:1
5.0 lnc-ATP10A-4:1
5.1 lnc-ATP10A-13:1
5.2 lnc-ATP10A-4:1