Transcript: lnc-ATG5-3:3

Basic information

LNCipedia transcript ID: lnc-ATG5-3:3 
LNCipedia gene ID: lnc-ATG5-3
Ensembl Gene ID: ENSG00000282408
Ensembl Transcript ID: ENST00000632749
RefSeq ID: NR_134603
Location (hg38): chr6:106451496-106457248
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 415 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000632749.1; NR_134603.1
Alternative gene names: ENSG00000282408.1; RP3-335E1.1; AL109920.1; LOC105377924


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -245.8689 non-coding 
CPAT coding probability 8.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG5-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ATG5-3:3
4.1 lnc-ATG5-3:3
5.0 lnc-ATG5-3:3
5.1 lnc-SNX3-23:4
5.2 lnc-ATG5-3:3