Transcript: lnc-ATG4C-3:1

Basic information

LNCipedia transcript ID: lnc-ATG4C-3:1 
LNCipedia gene ID: lnc-ATG4C-3
Ensembl Gene ID: ENSG00000227485
Ensembl Transcript ID: ENST00000418091
Location (hg38): chr1:63024207-63025658
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 359 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000216; ENST00000418091; ENST00000418091.1; RP11-5P4.2-001; OTTHUMT00000025349.1; NONHSAT003651
Alternative gene names: XLOC_000230; linc-FOXD3-4; ENSG00000227485; RP11-5P4.2; ENSG00000227485.1; OTTHUMG00000009148.1; AL162400.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.2993 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG4C-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG4C-3:1
3.1 lnc-ATG4C-3:1
4.0 lnc-ATG4C-3:1
4.1 lnc-ATG4C-3:1
5.0 lnc-ATG4C-3:1
5.1 lnc-ATG4C-8:2
5.2 lnc-ATG4C-3:1