Transcript: lnc-ATG10-3:1

Basic information

LNCipedia transcript ID: lnc-ATG10-3:1 
LNCipedia gene ID: lnc-ATG10-3
Ensembl Gene ID: ENSG00000249483
Ensembl Transcript ID: ENST00000512859
Location (hg38): chr5:81851601-81852201
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 601 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512859; ENST00000512859.1; CTD-2249K22.1-001; OTTHUMT00000369544.1; NONHSAT102470
Alternative gene names: ENSG00000249483; CTD-2249K22.1; ENSG00000249483.1; OTTHUMG00000162555.1; AC026726.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.7786 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG10-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG10-3:1
3.1 lnc-ATG10-3:1
4.0 lnc-ATG10-3:1
4.1 lnc-ATG10-3:1
5.0 lnc-ATG10-3:1
5.1 lnc-MSH3-12:1
5.2 lnc-ATG10-3:1