Transcript: lnc-ATG10-1:1

Basic information

LNCipedia transcript ID: lnc-ATG10-1:1 
LNCipedia gene ID: lnc-ATG10-1
Location (hg38): chr5:81894919-81900819
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010006; NONHSAT102472
Alternative gene names: XLOC_004443; linc-ATG10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.9084 non-coding 
CPAT coding probability 19.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG10-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG10-1:1
3.1 lnc-ATG10-1:1
4.0 lnc-ATG10-1:1
4.1 lnc-ATG10-1:1
5.0 lnc-ATG10-1:1
5.1 lnc-MSH3-15:1
5.2 lnc-ATG10-1:1