Transcript: lnc-ATAD2B-5:1

Basic information

LNCipedia transcript ID: lnc-ATAD2B-5:1 
LNCipedia gene ID: lnc-ATAD2B-5
Ensembl Gene ID: ENSG00000223530
Ensembl Transcript ID: ENST00000423706
Location (hg38): chr2:23330664-23332044
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003233; ENST00000423706; ENST00000423706.1; AC012506.1-001; OTTHUMT00000324314.1; NONHSAT069537
Alternative gene names: XLOC_002020; linc-APOB-10; ENSG00000223530; AC012506.1; ENSG00000223530.1; OTTHUMG00000151898.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6529 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATAD2B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC011239.1.1-3:1
3.1 lnc-AC011239.1.1-3:1
4.0 lnc-AC011239.1.1-3:1
4.1 lnc-AC011239.1.1-3:1
5.0 lnc-AC011239.1.1-3:1
5.1 lnc-DNAJC27-50:1
5.2 lnc-ATAD2B-5:1