Transcript: lnc-ATAD2B-2:1

Basic information

LNCipedia transcript ID: lnc-ATAD2B-2:1 
LNCipedia gene ID: lnc-ATAD2B-2
Ensembl Gene ID: ENSG00000283031
Ensembl Transcript ID: ENST00000634300
Location (hg38): chr2:23667208-23685453
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2706 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634300.1
Alternative gene names: ENSG00000283031.1; RP11-557N21.1; AC009242.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.8234 non-coding 
CPAT coding probability 37.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATAD2B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ATAD2B-2:1
4.1 lnc-ATAD2B-2:1
5.0 lnc-ATAD2B-2:1
5.1 lnc-DNAJC27-42:1
5.2 lnc-ATAD2B-2:1