Transcript: lnc-ASXL1-4:1

Basic information

LNCipedia transcript ID: lnc-ASXL1-4:1 
LNCipedia gene ID: lnc-ASXL1-4
Ensembl Gene ID: ENSG00000228156
Ensembl Transcript ID: ENST00000457213
Location (hg38): chr20:32581963-32593900
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 370 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457213.1; RP11-410N8.1-001; OTTHUMT00000078637.1; NONHSAT079365
Alternative gene names: ENSG00000228156.1; RP11-410N8.1; OTTHUMG00000032220.1; AL133343.2; AL133343.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.3324 non-coding 
CPAT coding probability 5.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASXL1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-410N8.4.1-1:1
4.0 lnc-RP11-410N8.4.1-1:1
4.1 lnc-RP11-410N8.4.1-1:1
5.0 lnc-RP11-410N8.4.1-1:1
5.1 lnc-BPIFB2-4:1
5.2 lnc-ASXL1-4:1