Transcript: lnc-ASXL1-1:1

Basic information

LNCipedia transcript ID: lnc-ASXL1-1:1 
LNCipedia gene ID: lnc-ASXL1-1
Location (hg38): chr20:32352675-32358182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4986 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000503924; TCONS_00027922; NONHSAT079354
Alternative gene names: ENSG00000249039; XLOC_013506; linc-ASXL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.9948 non-coding 
CPAT coding probability 5.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASXL1-1:1 no no no no

Available literature

  1. Garzon (2014), Expression and prognostic impact of lncRNAs in acute myeloid leukemia., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASXL1-1:1
3.1 lnc-ASXL1-1:1
4.0 lnc-ASXL1-1:1
4.1 lnc-ASXL1-1:1
5.0 lnc-ASXL1-1:1
5.1 lnc-BPIFB2-11:1
5.2 lnc-ASXL1-1:1