Transcript: lnc-ASPH-3:2

Basic information

LNCipedia transcript ID: lnc-ASPH-3:2 
LNCipedia gene ID: lnc-ASPH-3
Ensembl Gene ID: ENSG00000253711
Ensembl Transcript ID: ENST00000521801
Location (hg38): chr8:61300519-61301018
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 274 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521801.1; RP11-787D18.1-002; OTTHUMT00000378383.1; NONHSAT126865
Alternative gene names: ENSG00000253711.1; RP11-787D18.1; OTTHUMG00000164351.1; AC023866.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -247.3577 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASPH-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASPH-3:2
4.0 lnc-ASPH-3:2
4.1 lnc-ASPH-3:2
5.0 lnc-ASPH-3:2
5.1 lnc-IMPAD1-70:3
5.2 lnc-ASPH-3:2