Transcript: lnc-ASPH-1:2

Basic information

LNCipedia transcript ID: lnc-ASPH-1:2 
LNCipedia gene ID: lnc-ASPH-1
Location (hg38): chr8:61759101-61765969
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2743 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00014518
Alternative gene names: XLOC_007098; linc-ASPH-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.8669 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASPH-1:2 no no no no

Available literature

  1. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASPH-1:1
3.1 lnc-ASPH-1:2
4.0 lnc-ASPH-1:2
4.1 lnc-ASPH-1:2
5.0 lnc-ASPH-1:2
5.1 lnc-IMPAD1-78:1
5.2 lnc-ASPH-1:2