Transcript: lnc-ASPH-1:1

Basic information

LNCipedia transcript ID: lnc-ASPH-1:1 
LNCipedia gene ID: lnc-ASPH-1
Ensembl Gene ID: ENSG00000251127
Ensembl Transcript ID: ENST00000505627
Location (hg38): chr8:61759094-61765969
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2750 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505627; ENST00000505627.2; RP11-280G9.1-001; OTTHUMT00000378334.1; NONHSAT126880
Alternative gene names: ENSG00000251127; RP11-280G9.1; ENSG00000251127.2; OTTHUMG00000164337.1; AC091173.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.8669 non-coding 
CPAT coding probability 2.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASPH-1:1 no no no no

Available literature

  1. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASPH-1:2
3.1 lnc-ASPH-1:1
4.0 lnc-ASPH-1:1
4.1 lnc-ASPH-1:1
5.0 lnc-ASPH-1:1
5.1 lnc-IMPAD1-78:2
5.2 lnc-ASPH-1:1