Transcript: lnc-ASCL5-1:1

Basic information

LNCipedia transcript ID: lnc-ASCL5-1:1 
LNCipedia gene ID: lnc-ASCL5-1
Location (hg38): chr1:201115776-201127184
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 203 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00000713; ENST00000412995; ENST00000412995.1; RP5-894H24.2-001; OTTHUMT00000098724.1
Alternative gene names: XLOC_001151; linc-CACNA1S; ENSG00000237688; RP5-894H24.2; ENSG00000237688.1; OTTHUMG00000041189.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.6272 non-coding 
CPAT coding probability 2.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASCL5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CACNA1S-1:1
3.1 lnc-CACNA1S-1:1
4.0 lnc-CACNA1S-1:1
4.1 lnc-CACNA1S-1:1
5.0 lnc-CACNA1S-1:1
5.1 lnc-MYOG-60:1
5.2 lnc-ASCL5-1:1