Transcript: lnc-ASB5-2:2

Basic information

LNCipedia transcript ID: lnc-ASB5-2:2 
LNCipedia gene ID: lnc-ASB5-2
Location (hg38): chr4:176316214-176319841
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3628 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1079:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.0826 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB5-2:2 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ASB5-2:2
4.1 lnc-ASB5-2:2
5.0 lnc-ASB5-2:2
5.1 lnc-AGA-10:5
5.2 lnc-ASB5-2:2