Transcript: lnc-ARL4A-54:5

Basic information

LNCipedia transcript ID: lnc-ARL4A-54:5 
LNCipedia gene ID: lnc-ARL4A-54
Ensembl Gene ID: ENSG00000229618
Ensembl Transcript ID: ENST00000411542
Location (hg38): chr7:13101472-13704149
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012956; ENST00000411542; ENST00000411542.1; AC011288.2-001; OTTHUMT00000326010.1; NONHSAT119250
Alternative gene names: XLOC_005988; linc-LOC100129335-5; ENSG00000229618; AC011288.2; ENSG00000229618.1; OTTHUMG00000152349.2; ENSG00000229618.2; AC011287.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.3654 non-coding 
CPAT coding probability 7.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL4A-54:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL4A-1:2
3.1 lnc-ARL4A-1:2
4.0 lnc-ARL4A-1:2
4.1 lnc-ARL4A-1:2
5.0 lnc-ARL4A-1:2
5.1 lnc-AHR-54:5
5.2 lnc-ARL4A-54:5